NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1000322

Scaffold Ga0209654_1000322


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1000322 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49215
Total Scaffold Genes96 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)73 (76.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012459Metagenome / Metatranscriptome280Y
F055434Metagenome / Metatranscriptome138Y
F080899Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100032212F055434GAGGMQYCTFNTHCAAVLDSNYALLTAEQLQLTQAERCFVVQFLADTLASLTQINNESILEGEDYVMRLTDACEVMQNLQALYDTYEDDSARLTFTLADAGAALCSYDTEYRECIAEQFECECDSAAKTAKQTHATGADYATLALRVLCAY
Ga0209654_100032234F012459AGGAGMADPITLNYIGLTRKRGTITVSDPDVVTVLNLIPLIVADEDPTLGVLTNNDYDIALERDLNVTDVNNGSDTCTDAGIVDGDTIICIDDKKNLTSTNTKEVRQNRKLRIASVKREYDSSRGVGSSSNDRYTLDATQIPNPYEGNAVNPDDDENTGSLVVGRPWT
Ga0209654_10003224F080899AGGAGGMSAGSSKYEAIDVITTIRQTIEVPKDSDKQEILNFLASDQSFRDAFVGMKNDAYDMVIQDIEVIDEDFE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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