Scaffold Ga0209654

Basic Information
Taxon OID	3300025608 Open in IMG/M
Scaffold ID	Ga0209654_1000502 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025608 Open in IMG/M

Scaffold ID

Ga0209654_1000502 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37823
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (19.77%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

37823

Total Scaffold Genes

86 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (19.77%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Saanich Inlet, British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013533	Metagenome / Metatranscriptome	270	Y
F016009	Metagenome / Metatranscriptome	250	Y
F017142	Metagenome / Metatranscriptome	242	Y
F024656	Metagenome / Metatranscriptome	205	Y
F036588	Metagenome / Metatranscriptome	169	Y
F087229	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209654_100050234	F017142	N/A	MNYSELTKLSIEELRILNKKVVEVIKIKKSETALNVKESLYVGANVSVNHPKLSGKQLRVEKINRTKAVLKVLNGYGTYTVPMNMISVNV
Ga0209654_100050246	F013533	N/A	MFELEDIKTVKGFIKHFGEPKEAMLMDLTQEFMEAYHRYEVDPIELVKGFGVDWIELLMKYNEDIEEYELCAIFRDLVNDYEQIK
Ga0209654_100050263	F036588	N/A	MDYWNNFTYFFRRKYRQIQRVIDFLPMIWNGFDFDYKYSIELFKKQLERQAKHLESDRAHTLSAPINAQKIRTAIRLMDKVYDEEYASEYMAQIDKLYGTTHYDFVDVGEVSKRTGEELYEMKVWNENAVDEQHQKEIDEVRREMMIHSFDKQKRAHKLLWDFIEHNIQRWWD
Ga0209654_100050268	F016009	N/A	MKSDKRWNKEMKRYRILQHELRGESVYIVEWNDKWLFGVWGRWHPKFQTTSLEDAIKKIHRLVTLKTNK
Ga0209654_100050276	F087229	N/A	MISIESFITDDELIKNPLVTKKILERLTPSQQKKLDEGKILLNPVNGDMIVPVMTQNGIAKIIVNIF
Ga0209654_100050281	F024656	N/A	MSKETKDWMQRLVENYRIPTEEEVGKNTEQPKMLKESQLKKILERD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209654_1000502

Overview

Ecosystem & Geography

Associated Families

Sequences