NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1000921

Scaffold Ga0209654_1000921


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1000921 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25908
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (61.40%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017137Metagenome / Metatranscriptome242Y
F021020Metagenome / Metatranscriptome221Y
F034945Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100092139F017137N/AMIVDNNIGGNGKVDPRRLRGRVREPQVDAVAVARESEQERKLANYEKQEKLRAPKVQIDQRVILWSWITGIAIAFVASAIVSFNGITAVAQFVGLSQAWMGGLFFFFIELMYLLFLVAYLVLASRVDDDGKQEKTWGAIMGMVAFGGLAVLANGFHTFDFWNWDWTEPRMWAGIILSISAPIAIISASKMASRVVFAKSIKL
Ga0209654_100092156F021020AGGAGMSNTISLNNSIICENYDLNIWDRRGYETEYEEEGWAIECYTYPYVGAVYGSGEYHSTILLTPTEAKRLTLGWGEDLGGDYTPDADFWLDKDTFFETYTDIPERVANLLWALPGYEQRLDIPA
Ga0209654_100092157F034945N/ARTTRNYPGRNQIMGDRVNVGIRGTDGNTIFLYLHWGGEDANEIVAKAIAHSMSRGDDEAYLTRIFVSRVIDRDWDKETGVGMSINKLSAMGDGYAVPVYDYANKTISLHEEKWDSAGGYIDLEPHTVYNVDEYLAKFAIRGVGAYV
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