NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209654_1002378

Scaffold Ga0209654_1002378


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1002378 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13042
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048914Metagenome / Metatranscriptome147Y
F097116Metagenome / Metatranscriptome104N
F100939Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_10023784F100939GGAMGNRLAPQKDAKVADEEMKKKARERAVMNRLSSMPGRASS
Ga0209654_10023788F097116AGAAGMSYSNPTKTVGAVYDAVKRAFGDESGVQLTNYDIVRWVNEAQVDISKQNQILQTTATLAVTGGVATYALSTVTPAIDSVASLLLNGRRVGNIPISQAEESISLADPEGTETGAPQFWYAWGGDITFWPVPNKDYTMTIRYTAQPSDVTTNSTDVLSVPDECFTDICNFVLMKAYEMDENPEMMAVKQAEYSASVAERGETERLAATMTYETNITFDLN
Ga0209654_10023789F048914N/AMETYLGQAANVFNSDLGEFVREDHVHFAQVLQDLKPTYKLVYIPQKDRTTPEEKTKPWAILDHPDNMPEYIVRYISEEEMKTPHKIIAWLFDGDVVRHGADNILKRIEAEENAKKLLDYKRQEDDLEDRLDHIEFLASGGRNKLHTVTHNGKKFER
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.