NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1002408

Scaffold Ga0209654_1002408


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1002408 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12950
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022786Metagenome / Metatranscriptome213Y
F042639Metagenome158Y
F044813Metagenome154Y
F096247Metagenome105Y
F102110Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100240810F096247GAGMSRLTPDVTCNICTCEFDIEAEGGVQGYIGIIPFSLCPMCYSGLMDMYEQLNGDFDEHENGQEIQGNDEE
Ga0209654_100240813F022786GGAGMTIDDDKLIALEQAGLLKGRYYIVLEPVEDEDEDEDGFTIRAYATRDTQVEVDGEKMFDPTYVILQGLLGAVHENFDDLYDMGLERVTLEALGEVVPEEELKPEHRDRIKSMEGNVITARFGELQ
Ga0209654_100240816F042639AGGMKTADIKKVVELQGKILKLKDRIMKDVERHNTMVIDELRPALEEVQYATIYQLGDMTYKRGKVFCQLNCEDLGLGIKADGLATLRRIVVEDKNAPSDDAESGSSTPVSK
Ga0209654_10024084F044813AGAAGMADPKAQLLNFTIELNRDGNIEFNLDCVNTIDMERILRNLGDPVYPHKIGNIVRHYFRSLQDKIKEERT
Ga0209654_10024086F102110GGAGGMTDARVQKMLDRLKLQIEACELNPMLGNKEVLADAHKMIYDLRNKLRFRKPYDRDHPDTRAN
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