NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1004123

Scaffold Ga0209654_1004123


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1004123 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8474
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027808Metagenome / Metatranscriptome193Y
F043147Metagenome / Metatranscriptome157Y
F072121Metagenome / Metatranscriptome121Y
F089559Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100412312F072121AGGAGMLLPNVATSILIMELRNRVFDQIEDPEPQYDVLLSNLSGKRILELGAVLQDVPITNTEPKEVR
Ga0209654_100412314F043147GAGGMNKVPPVERDSSTGGLTMACAGLWCQFLSEEFDWQGNRSLSEYYKRRSQELSRAPTGSLHDRRLEEAIKAWKR
Ga0209654_100412315F027808AGGAGMTDHENQYDPQLQWVIDEVIHAVTNKQCTDLVWYELYEQLYQTTPDDAWDEYQQQQLFEAKGEALYEQSTTSRA
Ga0209654_10041238F089559AGGAGMARHIYTVEDFEERLSEFTIGTESVQEIMDFVRRLDDRYNWQSKRCNTAARLLGHDMINECMMDEDNV

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