Basic Information | |
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Taxon OID | 3300025608 Open in IMG/M |
Scaffold ID | Ga0209654_1004177 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8364 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F045113 | Metagenome / Metatranscriptome | 153 | Y |
F066826 | Metagenome / Metatranscriptome | 126 | Y |
F079712 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209654_100417711 | F045113 | GGAGG | MDIAQILTKRYPDAEWTLDGDSYSGLTWLSDSTKPTFAELEAEQAQVEYEVAYARVVADRQAAYRDDSDPVFFDFQRGEATEQDWLDAVQAVKDANPYPVDPSTIVEPEPVVDDEVSEPVEEV |
Ga0209654_10041775 | F066826 | AGGAG | MASQTSPSGIVYPDASDPIAPLNTVFKDLADSVEAALTGGGTEVTAVGFEQNFMMMGA |
Ga0209654_10041776 | F079712 | GGA | MSIPDPYLPPPSQPWGRWVTTTLRNYLAKRQEFDTATYNAIKQLNVSTYQPMRGVLWNQAGDTITITTAGEYVPMNMAGTVDTATTFNMEVTGAPNVTGWKNNTNQARTVIMLASYDGKCGNNNAMGLKLALNGVPIDATECRSFAGGGGQVGKTFTHWIQRMEPDDEVTMWAANIDTTDDLEVERLKFIATAIP |
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