NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1004177

Scaffold Ga0209654_1004177


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1004177 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8364
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045113Metagenome / Metatranscriptome153Y
F066826Metagenome / Metatranscriptome126Y
F079712Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209654_100417711F045113GGAGGMDIAQILTKRYPDAEWTLDGDSYSGLTWLSDSTKPTFAELEAEQAQVEYEVAYARVVADRQAAYRDDSDPVFFDFQRGEATEQDWLDAVQAVKDANPYPVDPSTIVEPEPVVDDEVSEPVEEV
Ga0209654_10041775F066826AGGAGMASQTSPSGIVYPDASDPIAPLNTVFKDLADSVEAALTGGGTEVTAVGFEQNFMMMGA
Ga0209654_10041776F079712GGAMSIPDPYLPPPSQPWGRWVTTTLRNYLAKRQEFDTATYNAIKQLNVSTYQPMRGVLWNQAGDTITITTAGEYVPMNMAGTVDTATTFNMEVTGAPNVTGWKNNTNQARTVIMLASYDGKCGNNNAMGLKLALNGVPIDATECRSFAGGGGQVGKTFTHWIQRMEPDDEVTMWAANIDTTDDLEVERLKFIATAIP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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