NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209654_1022688

Scaffold Ga0209654_1022688


Overview

Basic Information
Taxon OID3300025608 Open in IMG/M
Scaffold IDGa0209654_1022688 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2288
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027808Metagenome / Metatranscriptome193Y
F043147Metagenome / Metatranscriptome157Y
F072121Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209654_10226881F027808N/ADHAQQYDPQLQWVIEEVIFAITQQKQTDAVWFDVYETITGSTADEAWDEYQLQQRMDAEGEARFEQEQYDAETYTR
Ga0209654_10226883F043147GGAGGVNKVPPVERDLLTGGLTFESASRWCQFLAEEFDWQGNRSLSEYYKRRSQELSRAPTGSLHDRRLEEAIKSWKR
Ga0209654_10226887F072121AGGAGGMLTNVSTAIILMELRNRVFDQIEDPEPQYDVCLSKLSGKRLLELGAVLQNIRIATPEPEE
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