NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208149_1000712

Scaffold Ga0208149_1000712


Overview

Basic Information
Taxon OID3300025610 Open in IMG/M
Scaffold IDGa0208149_1000712 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12722
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004106Metagenome453Y
F006983Metagenome360Y
F010994Metagenome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0208149_100071210F006983AGGMSKARGGHAPVDYTIGAEVINDTAVHNGKFRHIDFYENSTITAIVSTNVIDNNFAGASVDQDAHLTGYFTSIQLQNGACIAYKI
Ga0208149_10007124F010994GGAGVHDMDLPSLRHFRSEGIYTISSDPVEALIGEAWVPAKYTDRGWATADGSTLLTGVEDWRYAVEEGQVAGCDISKHPQRDESRQATKAGSSNRVRKSRKKPQAQA
Ga0208149_10007129F004106N/AMSRFIPIDPSYSIGADFVNDTSTYNGRWRRITILKGNTSFAALTAQNWTGNSIIGEGLPAGFTIEGVFTSFELNTGGAVIAYKV
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