NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208149_1049325

Scaffold Ga0208149_1049325


Overview

Basic Information
Taxon OID3300025610 Open in IMG/M
Scaffold IDGa0208149_1049325 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1093
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041146Metagenome / Metatranscriptome160Y
F070017Metagenome123N
F084122Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0208149_10493251F070017N/AFCDTPLSDERAEIYSHCPADNCVVMWKRERLSDYSLTLVPKSGFQIVLKTDNFLKVGGRSSGKV
Ga0208149_10493252F084122AGGCGGMFYYNVKFTNGESLVILSEGDPTDEIPAEFQGDITDIQTICEVSA
Ga0208149_10493254F041146GGAMPETIHLYQIDGGYTYWEAYSDYTNDYLFSLDDDDVGDYLAKNKDKDIRVYDQEPYNAMYHIHIEMDKWWGRDDYHLDDCPAIHNPQERLDYLCEGCAA
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