Basic Information | |
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Taxon OID | 3300025617 Open in IMG/M |
Scaffold ID | Ga0209138_1006844 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6852 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022786 | Metagenome / Metatranscriptome | 213 | Y |
F042639 | Metagenome | 158 | Y |
F044813 | Metagenome | 154 | Y |
F096247 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209138_100684414 | F044813 | N/A | MADPKAQLLNFSIELNRDGNIEFNLDCVNTVDMERTLRALGDPTYGHKVGNIVRHYFRHLQEK |
Ga0209138_10068442 | F042639 | AGG | MKTTDIKKIVELQGKIIKLRDRIWKDVERHNSMVIDELRPMLEGVQHATIYQVGDMTYKRGRLFHQLDCQDYGLGIKAEGLATLRRIIVEDKDAPSDDTESGSSTPIPE |
Ga0209138_10068445 | F022786 | GGAG | MSVDDDKLIALEQAGLLRDRYYIVLEPTDDEDEDEDGFAIRAYATKNFKMGDDDEHYVDPTYVILQGLLGAVHEHFDDVYDMGLERITLEALGEVVPEEDLKPEHKDRIKSMEGNVIMADFGNLQ |
Ga0209138_10068448 | F096247 | GAG | MSGLEPDDKCSICTCEFDMESEGGVQGYIGIIPFSLCPMCYSGLMDMYDQLNGDFEYDNEDRQEIPGDDEE |
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