NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209138_1009557

Scaffold Ga0209138_1009557


Overview

Basic Information
Taxon OID3300025617 Open in IMG/M
Scaffold IDGa0209138_1009557 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5341
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060949Metagenome / Metatranscriptome132N
F079712Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209138_10095572F079712GGAMSIPDPYLPPPSQPWGRWVTTTLRNYLAKRQEFDTATYNAIKQLNVSTYQPMRGVLWNQAGDTITITTAGEYVPMNMAGTVDTATTFNMEVTGAPNVTGWKNNTNQARTVIMLASYDGKCGNNNAMGLKLALNGVPIDATECRSFAGGSGQVGKTFTHWIQRMEPDDEVTMWAANIDTTDDLEVERLKFIATAIP
Ga0209138_10095579F060949AGGTGGMATFHDLLTLSNSTATELTPGARHSGLDLTIQNVDDTAIVYIGGEGVTASDYGFKLDPGAGFSIELNPNDRLYAISDTNESNAALLRALLEDI
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