NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209138_1010488

Scaffold Ga0209138_1010488


Overview

Basic Information
Taxon OID3300025617 Open in IMG/M
Scaffold IDGa0209138_1010488 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4976
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021020Metagenome / Metatranscriptome221Y
F034945Metagenome / Metatranscriptome173Y
F042350Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209138_101048810F021020AGGAGMSNTISLNNSIICENYDLNIWDKVGYETEYQEEGWAIECYTYPYVGAIYGSGEYHSTIVLTPTESKRLTLGWGPDLGGDYTPDADFWLDKDTFFETYTDIPERVANLLWALPGYEQRVDIPAW
Ga0209138_10104883F042350AGGAMPGRESEYMRGYIQGVSAMMGLVGSDKVKRLDKSNVLQYARELVEAKREEETNAPR
Ga0209138_10104889F034945AGGAMGDRVNVGIRGTDGNTIFLYLHWGGEDANEIVARAIAYSMSRGDDEAYLTRIFVSRVIDRDWDKETGVGMSINKLSAMGDGYLVPVYNYANKTISLHEEKWDNAGGYIDLEPQTVYNVDEYLAKFAIRGVGAYV
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