NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207926_1055694

Scaffold Ga0207926_1055694


Overview

Basic Information
Taxon OID3300025619 Open in IMG/M
Scaffold IDGa0207926_1055694 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025930Metagenome / Metatranscriptome199Y
F053595Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0207926_10556941F053595N/AMFRSSVAAFYALPECLFYCFADPVRQDRFHMFRLLLPIRSEVEKVVHWMPEILFAAEIAFRGLH
Ga0207926_10556943F025930N/ARLYGRRTHEQRTKEQLIDLAKESGQHLEKDKSQIASLEADQRKLVSLLLSLTKITGSLRNRLSELSRDNKALTESLEKRAPDVHSLFSDLRSSSKDDASWTDFPSIQELEKSIEAILGPI

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