NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209405_1000007

Scaffold Ga0209405_1000007


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1000007 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)162751
Total Scaffold Genes157 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (43.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074972Metagenome / Metatranscriptome119Y
F084335Metagenome / Metatranscriptome112Y
F093979Metagenome / Metatranscriptome106Y
F103398Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209405_1000007114F093979N/AMSNKDEFKGKPFTKDNREHALKDITPLNMDDKRTVCNVIRLIYQNADDEAFNLGAIRELALEAMWMGKRMNNKLTEHRRAELKTEYIKQSDSYLNCNYDMYPAQGNWD
Ga0209405_1000007133F084335N/AMKIISAVRHSGKTYHSKSLGFADCDEIIANKIGWPNHFDKKEFSDKIYACPHIEEHQVAVSFSQDSWKVLESWLKNNDTILSIPEVWSARSFWEWPIKPNVLVTIDEERHKQNLVEINQNHMWPTIKFWRHLLEHEAKENDIKVVNTFEDAILYLNEN
Ga0209405_1000007153F074972AGGMKYYIKDTTLVDSPVKLFESTQHTVEYLKTAVSRKTGMSYEQYLTHLADLGHFGYDEREVYESMRDHFDMGVMRGNKFVRCSIFEATHNAEGSD
Ga0209405_10000074F103398GGAMAKATHDKQFEIVIAILGIIGGGIIPFPELIGWGFVVFAIVNFLSIFFFAGRKMYWLAALAFYFVVVDSIGIWIHVIEKHFLN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.