NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209405_1000215

Scaffold Ga0209405_1000215


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1000215 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50679
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (84.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070557Metagenome / Metatranscriptome123N
F081371Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209405_100021526F070557GGGGGMSTSEIKSNIIRDLQGIDQAVDSHVLVMAGDNHTIRMFSCWLDGSYLGEDHYRQNLKRIGECLDSRKKLRSFVIEQFTKYIAHDAQCSYGYAQKVIVDYLGTELLHNLNSELIDYVTEFYDAHVGEVA
Ga0209405_100021531F081371AGAAGGMITNYTPQSTIEAMQVALFRSLTARSIDRAQAAATLAQSMASNLTQQELEQAKAGAIDMAVREQQGRKSNG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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