Scaffold Ga0209405

Basic Information
Taxon OID	3300025620 Open in IMG/M
Scaffold ID	Ga0209405_1001943 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025620 Open in IMG/M

Scaffold ID

Ga0209405_1001943 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14086
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (20.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14086

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (20.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F081203	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209405_100194310	F030436	N/A	MKSTLKKIAEIIKEYKQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHNDFEKVIHNRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY
Ga0209405_100194315	F038672	N/A	MDELDIMLRKNKLDIMIIKASAEVEKTNNKVKQEGLEVLMDILELIHDLQHEIRQNYKDISKLKYENAVAYKENAIIKADFSTYKHNLKKAELETNKNG
Ga0209405_100194318	F005706	N/A	VKESRVLKALGLSSLDIQNLLMNGMTMPEIAKKYKITYISLVQAFEIQKKDFKYIDYKQPKKEVEDIKLVSSTSERLYTEESLNENELLAFYKYEQKNKAYYERRTTLV
Ga0209405_100194324	F081203	GGA	MDKYEFYYRQKQEWDYWQANQRHNFLSDRLLGIISQVQWNKGILKRTKLNDNDLEIHQNRFSDLITDVVKISIELKELAINYNPKRIKQLIIILTKIKNYNNEPIENS
Ga0209405_10019434	F043411	GAGG	MDWMTKKTFKKEMLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVEFK
Ga0209405_10019438	F056150	N/A	MDKKLIKKIENFIFWIGREYKVVELEDFKQDIFIILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209405_1001943

Overview

Ecosystem & Geography

Associated Families

Sequences