NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209405_1001943

Scaffold Ga0209405_1001943


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1001943 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14086
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (20.59%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005706Metagenome / Metatranscriptome392N
F030436Metagenome185N
F038672Metagenome165N
F043411Metagenome / Metatranscriptome156N
F056150Metagenome138N
F081203Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209405_100194310F030436N/AMKSTLKKIAEIIKEYKQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHNDFEKVIHNRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVVDAMRTNISFLKSEMYNVTKEY
Ga0209405_100194315F038672N/AMDELDIMLRKNKLDIMIIKASAEVEKTNNKVKQEGLEVLMDILELIHDLQHEIRQNYKDISKLKYENAVAYKENAIIKADFSTYKHNLKKAELETNKNG
Ga0209405_100194318F005706N/AVKESRVLKALGLSSLDIQNLLMNGMTMPEIAKKYKITYISLVQAFEIQKKDFKYIDYKQPKKEVEDIKLVSSTSERLYTEESLNENELLAFYKYEQKNKAYYERRTTLV
Ga0209405_100194324F081203GGAMDKYEFYYRQKQEWDYWQANQRHNFLSDRLLGIISQVQWNKGILKRTKLNDNDLEIHQNRFSDLITDVVKISIELKELAINYNPKRIKQLIIILTKIKNYNNEPIENS
Ga0209405_10019434F043411GAGGMDWMTKKTFKKEMLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVEFK
Ga0209405_10019438F056150N/AMDKKLIKKIENFIFWIGREYKVVELEDFKQDIFIILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.