NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209405_1006350

Scaffold Ga0209405_1006350


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1006350 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6319
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006896Metagenome / Metatranscriptome362Y
F016205Metagenome / Metatranscriptome249Y
F052536Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209405_10063502F016205N/AMKELKNTSVCYPTNEIWFICWDNTRAEIMAYGSILSSQCLETPWVEIDYYDNEEQWAEILIENGINPFEEN
Ga0209405_10063506F052536N/AMIRLLPISTSQTFSILPRTSDITNIDATIREDGTGESVSFTGVTAVVNGDYIDITLSSDKFIAERAYVLEMTRDTNLWYRDKIYVTSQINTDIYHTISTDYYKENNTDGDDKYITI
Ga0209405_10063509F006896N/AMANEIYPVSWWGSPVENGWGGIYYDYAFPSAIPSLLASLQARASYYENVTCTTATLTTIENIE
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