NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209405_1067446

Scaffold Ga0209405_1067446


Overview

Basic Information
Taxon OID3300025620 Open in IMG/M
Scaffold IDGa0209405_1067446 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009493Metagenome317N
F084220Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0209405_10674463F009493N/AMRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKEQLGYNTGAPYNSFRVTAYVRYRYDLDNSIIATKFTSDALKTLGWIKDDSPKYFRRLLMVWTEQIPKDKAQITIELSDEHPE
Ga0209405_10674464F084220N/AYLSRELEEYQYRIDTTCEKCGESTDPDYYDCNCSDEEE

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