Scaffold Ga0209504_1003460

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209504_1003460

Scaffold Ga0209504_1003460

Overview

Basic Information
Taxon OID	3300025621 Open in IMG/M
Scaffold ID	Ga0209504_1003460 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9859
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012772	Metagenome	277	Y
F025174	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209504_100346012	F025174	AGGAG	MSSFTDPMAALEEAEYLAKEEKRTMCVVEVEPNMIIVVSKREALNMGKIILETCVPFEENFNIYD
Ga0209504_10034603	F012772	AGG	MNGESFYVDIDGDKWQYMLVTDPEAALYWKPSTYKLKLSDIKIATKCSPGDRKRLRREILKDIQENEDEQ

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