NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209504_1029199

Scaffold Ga0209504_1029199


Overview

Basic Information
Taxon OID3300025621 Open in IMG/M
Scaffold IDGa0209504_1029199 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1937
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → environmental samples → uncultured gamma proteobacterium HF0010_09F21(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047921Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209504_10291993F047921N/AMSLNKLEEQLEHLNLQAELNIAKKRGGQVAGNPDRGYSVCQCSSENFINYSDRPFHTRAAFVSTWLIGFNAAEINKDFYYKYDFFKLISHAIMDHCCPSWIISPRISKKTFYDCALMWDCFEEALLIYKDECSNHKEMYRGMAECIKEMKDEDARGSLTAALDYVFRDDLEYLKAPYPTFKYKA
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