NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209504_1030598

Scaffold Ga0209504_1030598


Overview

Basic Information
Taxon OID3300025621 Open in IMG/M
Scaffold IDGa0209504_1030598 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1871
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010571Metagenome302Y
F047975Metagenome / Metatranscriptome149Y
F059441Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0209504_10305985F010571GAGGMSNIITETYADKLYEELYEKYYEEVGKTTDDVGYIEKEAERLALIDLDNFEMEG
Ga0209504_10305986F047975GGAGGMRITKEEWVEGTVEDMDWKDLYRMAYDVMLDSVKDMSNKEFKEYLIECGYEEVEE
Ga0209504_10305987F059441AGGAGGMKTWSSTITYTVFDIGADCETKEDYIEYVKETFEQEHNIYLRDDEITDIQKEESYNE
Ga0209504_10305988F003976AGGAGGMSKLYREYEYEKECIRDTLDKLEMSVRFLNVWVSEPMGLENAKYVLEKNSNRIYDLLDINMVKELVEEEVR
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