NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1000668

Scaffold Ga0209716_1000668


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1000668 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30582
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (17.39%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005706Metagenome / Metatranscriptome392N
F020903Metagenome / Metatranscriptome221N
F029278Metagenome / Metatranscriptome189N
F038672Metagenome165N
F056150Metagenome138N
F081203Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100066813F038672N/AMDELDIMLRKNKLDIMIIKASAEVEKTNNKVKQEGLEVLMDILELIHDLQHEIRQNYKDIAKLKYENAVAYKENAILKADFSTYKHNLKKAELESDKNG
Ga0209716_100066817F005706N/AMKESRVLKALGLSSLDVQNMLMNGMTMPEIAKKYKITYISLVQAFEIQKKDFKYIDYKQPKKEVEDIKTVSSTSERLYTEESLNENELLAFYKYEQKNKAYFEIN
Ga0209716_100066821F081203GGAGGMDKYEFYYRQKQEWDYWQANQRHNFLSDRLLGIIDQVQWNKNILKRTKLSDNDLEIHQNRFSNLITEVVKISIELKELAINYNPKRIKQLIIILTKIKNYNNEPIENS
Ga0209716_100066845F020903N/AMADQLDIFGFDVDQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVQKEGLVYKGSLQKSIRMPVKMFGFRMVATLYLADYYDYLNQGVKGIGGVRKSGDKKGQPWVIKAPNSPYQFKKGPSVSHVRQWAKSKGLNEYAVRNSIARTGIRPRYFFDNCMQETFYGEAFNKFKTDIRIVSGERVAKGLKEILKK
Ga0209716_100066846F029278N/AMEITIPTKWEDVTIGNYINLRPVLNSKLNPIERVVNILAVLTGQKRDVIKNISLKQYKSIKKKMSFLETELPKQLKDKRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAKDDEEAIFNNLHHILTTICRPVKKTVFGWKHIEVDSEVLRKTADNFLNNMPMTIAYPIGVFFYTHSEDLTKAIKTCLMQEAEKMTKEAREELDLVNVGGGGTP
Ga0209716_10006689F056150N/AMDKKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLIDSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS
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