NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1001953

Scaffold Ga0209716_1001953


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1001953 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14328
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013533Metagenome / Metatranscriptome270Y
F016009Metagenome / Metatranscriptome250Y
F090239Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100195322F090239N/AMSKKVIGKKYGIEITKPWNVEMYNWNDDVAKILKIGLYNKLEEFYHKNDIDGMNEIALSFGAGYGEGYDVDSIYDGIFEDLKYVQNYQLNEELEWLVSKNIIKKPKYGFVGYDK
Ga0209716_100195324F016009N/AMINNRWNKEIKRYRVMEHTLRDKSVFIIEWNDKWFFGILGRWHPKVQTLTLEEAIRTIHKLVTLKLKK
Ga0209716_10019534F013533N/AMNEEIKTVAGFIDRFGEPETHLLDNMTQEFVSTYHRHGVDPYELVDGFGLDWLELLLQYNEDIEEYELCAVFRDLINDYKQK
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