NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1008367

Scaffold Ga0209716_1008367


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1008367 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5051
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012575Metagenome279Y
F020156Metagenome / Metatranscriptome225Y
F054775Metagenome139Y
F066795Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100836711F066795N/AMNLTKTFPKMSSNDWRKLQLSTDAKNQIDWASRRLHDMESDPDNFTLRDYLKVKAGYNTAVETLKELQ
Ga0209716_100836712F054775N/AMNQNKFNSLIDSLVDSVKDYNLDSSFDHYNAILEICSNCDHSFVYYKAWQLVNFVKFEHGSYDDNLFDEVEMEVKDNDHNTDDVTLNDYMMSYAFNILKVATLKKYESLKLEVA
Ga0209716_10083676F020156AGGAGGMRDTLKEELTRLVKHESFNLEYANEILELYDDEINDTSEFTAYDKAMQDIDNVKNGEWDL
Ga0209716_10083678F012575N/AMQSGNEKVMSVTEYIDETAFVYRVVSDYKEVYIEWHLKGLPHLFTGRASSHEEKIEQYKSVLKELKKLERKKTN
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