NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1012222

Scaffold Ga0209716_1012222


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1012222 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3861
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002035Metagenome / Metatranscriptome601Y
F026239Metagenome / Metatranscriptome198Y
F059010Metagenome / Metatranscriptome134N
F071647Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209716_10122221F026239N/AMALLKNHKGEYKYQFNWMNENGTTNGFNSVWASNKREAVKKAKEMENPAHWAWYNGTEYVDVPAEVTTGGHCFYNKGMYVNVKSMYKATQKQSDSMDRLSWMMTC
Ga0209716_10122223F059010N/AMTRLELLNQVAEKLERSEYTPIVTEKEEMQIWAMLLNKVYEEIK
Ga0209716_10122227F071647N/AMTVVKKISKSEFGKSVQLAKLNPANKVSKPSTSKYVMLGGIPHKLVNGSFVQLTKLVK
Ga0209716_10122229F002035N/AMGEQVANNREAQEVMYLHQSDGKWYILSEPKSPGLVKREYLPMGNRLVYPKKWGRKKAAEVLLNHLIKDNELIKELAEERLEYLNNLSNEVKNWK
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