NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1021346

Scaffold Ga0209716_1021346


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1021346 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2595
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010695Metagenome / Metatranscriptome300Y
F048349Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_10213463F010695AGGAGMKNLNTQNQSQAKITSTPGYSIGSFTCYNADDTAVTVQLTSLEEMWYGHEENINHPEGSEYPLNINVPHMKIMRQRVFDSILARTGIDVASYDSILHASTSPGRDESGNIILTSDDHMVRNVYV
Ga0209716_10213464F048349GGAGGMQNKIISNREMFRQLLARDILAILEQFNGGTCMRLIDIKAQLHGMSACRHYMNLHTSNGHGYLSWNDRFFRAIQSINDKGYGVSIRKHTNGQLWAFSTQTLKHDNWQLFIADCFTNWTADYNRNAGYKLNSERDEVVA
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