NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208004_1059347

Scaffold Ga0208004_1059347


Overview

Basic Information
Taxon OID3300025630 Open in IMG/M
Scaffold IDGa0208004_1059347 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1003
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022192Metagenome215N
F084174Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0208004_10593471F084174GGAGGMATQSVEFSAPSGQTVTARLFSAGNDTVVQTASAVTEATNRDGVYTATFTDAAAGAYRLIATNSGGTLLAQWWVDLTLTTATFQSYEMPVSVVQSGLSTLDAAGVRTAIGMASANLDTQL
Ga0208004_10593472F022192AGGMSTGSSNGGGYPVPDEEFVASEHARNKILRANQFQQLVLEQWIATYEDFYGLQPSGGSRYTTAEIQAVIDAMPATTARDIIADSGAFVSFVNTAAPGAIGDKYQSPAFEMTDDGATITVGELKPAWQPQPEANTDGNAVG
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