NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209194_1071036

Scaffold Ga0209194_1071036


Overview

Basic Information
Taxon OID3300025632 Open in IMG/M
Scaffold IDGa0209194_1071036 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)940
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056170Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209194_10710361F056170AGGAMDKLWEQEVDKLIHVAYYATTLGMNRKFAYNLVDRALRAASDVLSAECVNVVNNTASVIQWTTQWSEAAMAEYARIDALLTEKRSGKPPTHRQITQWRDVRGKRPFTVEHEYPILIPKKGVLDDHWTENELNEWMWKYGRATIITHPENDRLLNHTADMQIASKRYSVAGIKTVYHPNFT

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