NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208147_1000131

Scaffold Ga0208147_1000131


Overview

Basic Information
Taxon OID3300025635 Open in IMG/M
Scaffold IDGa0208147_1000131 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29884
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008546Metagenome / Metatranscriptome331Y
F079967Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208147_100013122F079967N/AMKDLLTVNNNVVIPSPYALTIPEFEKLKVKELAFVYFFVDHRSSYSAYGEEERKEVLMKDLGVKITPYLKAAVDKYMELSETHAIKLLKSARSSVNKLEKYFENIDLTAMDENGKLLYQAKDLVANLSKIGEVVEGLDRLEELVQKQQAKDNPNRAGVKTNKYSE
Ga0208147_100013145F008546N/AMSKRIKWWKLLIVFFSAIVLEANSIAGFRFLMDKNWIGMVLMVGINPFLCLPMNHYTIEVKTFKERALIALAFSLGFSVGVATIRPFFI
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