NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208147_1006127

Scaffold Ga0208147_1006127


Overview

Basic Information
Taxon OID3300025635 Open in IMG/M
Scaffold IDGa0208147_1006127 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3457
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031492Metagenome182Y
F032578Metagenome179N
F047047Metagenome150N
F048305Metagenome148N
F057369Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0208147_10061271F032578N/APIEGRPYDVRSEDILALNYIKTQIQSLDHERRDQYSTLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKETYTKAGEALGHLNAKQAELFAQICYGITADQVTIQYIPEQNTFRVQEVRQ
Ga0208147_100612710F047047AGGAGGVATQPKQFRYPAINLLATFTPGTNDQQIGDMLGISRSCVVRWRTVGKTLYEYQADTYAVKLGFHPAEIWHNWLDDAMSIA
Ga0208147_10061276F048305AGGMGISDYDITIKDKDFRIAELIDEAAQEQLATRKAEIQIVELSIEIARLNAHIQTLETTLAAMSGELHALRMDTQ
Ga0208147_10061277F031492GGAMRRFNIGDKVILDDESGVIESVVLMDGKQPRYDVRYGHTYMIAVDVPEEDIQPWMADEQ
Ga0208147_10061279F057369GAGGMMIEDPVAEFIEAAADGLCTAYVVVATVERIDGSQSFWITTLNRQTSSTTLGLLMSATSAEQYRIAKSLTEGT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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