NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209151_1107602

Scaffold Ga0209151_1107602


Overview

Basic Information
Taxon OID3300025643 Open in IMG/M
Scaffold IDGa0209151_1107602 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)739
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)165
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100885Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209151_11076021F100885N/AMAERIAGIALMPRQSRNGVYYDTEELKKFDGKTVPLRVEHNKETHIGQVTFSFDEEKSQVKYEATVFDSEWQKTLENEQYQVSIGASVLEQRTLCDEMKAKCLNAPVLDEILELSVVRTPGIPESTLHVVESHNAQYIKILNEQEVPASF
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