NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208161_1001883

Scaffold Ga0208161_1001883


Overview

Basic Information
Taxon OID3300025646 Open in IMG/M
Scaffold IDGa0208161_1001883 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10926
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (19.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010243Metagenome / Metatranscriptome306Y
F045689Metagenome152Y
F048242Metagenome148Y
F060928Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208161_100188324F045689N/AMDKKERFQLAKKNVLKRFPKATTLADSKGKFYVAQNGVDICNKEMNKAVKRGAALEELDLIQQVSHSETVFEAWLKAESMVIANRVIESNTERFSDEKVMAKMKEE
Ga0208161_100188328F010243N/AMNRPTFVLETKSRSGVRGERIHKCVANSLSEAVEIFATIKQLRPDQLLEIYSVYEQPSDG
Ga0208161_100188329F048242N/AMRKRRIIPTLPADFFSDVSNKVKYQKMLYSSILDGIEQSLHNGKPSFVMARVEDGKNIKDISILKESFKTNLETCLDFYERAEEYEMCSRTVELINQIK
Ga0208161_100188330F060928N/AMKKTELHDMVLETVSELVKEAELSTGDNNFTIKVDVNRNPTKKGIKIQLIPKEGTVLVDPDEKIDVNEKVQSAMNAKLRKYDLQVNIDPDIKQATDNPNVLGYYIPLNQFKNLILKALKG
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