NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208161_1039044

Scaffold Ga0208161_1039044


Overview

Basic Information
Taxon OID3300025646 Open in IMG/M
Scaffold IDGa0208161_1039044 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1604
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097128Metagenome104N
F104969Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208161_10390441F104969N/AMKNKKERDILSIEILYDYKEELEELVSSEDFNRLMFEEAIATIENALRKNRKTARVFYIPNLDCSVMLDEKNFNQVLETAIKFYEQQEEYDKCAELVTLKNKVNEPRKRNKGGA
Ga0208161_10390442F097128N/AMSQEKEIKEALEKILGSSVTLRYDGSDPVDELKADFIKVMDMYEGVWKRQNDLLENEGLDFTSYDENYFKVIEGFIHFCFEGVAADAILFYVYSRKDDDGTLHPFVDSKGNEHMFTTIDDLWEFLLYWAEEMMKP
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