NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208428_1001175

Scaffold Ga0208428_1001175


Overview

Basic Information
Taxon OID3300025653 Open in IMG/M
Scaffold IDGa0208428_1001175 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11196
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (54.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000413Metagenome / Metatranscriptome1169Y
F018008Metagenome / Metatranscriptome237Y
F018079Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0208428_100117510F018079N/AMYTVEKRKMIYIISRKPTWFHTHCLTPTPGTPLWHDPTWVIGDCELCNMDIDNQDWWNNCSYNQSQRKFYDLIEKELKVWI
Ga0208428_100117513F018008AGGMQFLNSRKFIIIMLIILVWAGLSGCTPNDYPNAKEPHETEQEMNAQITKDMEAMDKEKALEENPQPADFVGIAEALGCMFAPDNCVLQKRKEEQKMDR
Ga0208428_100117519F000413N/AVKKFYSIKLKQFKENIPPALAETMLLDESKLVKYLWKHKALEFRYPKHKGRLDLYADEKYLMMGKLKYPTMFGNRKRMGFMELYIAHRINQRMMNAKGST
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