NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209196_1024207

Scaffold Ga0209196_1024207


Overview

Basic Information
Taxon OID3300025654 Open in IMG/M
Scaffold IDGa0209196_1024207 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110509 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2340
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015079Metagenome257Y
F024541Metagenome / Metatranscriptome205N
F048232Metagenome148N
F091789Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209196_10242072F048232GGAMSKTVLPYQERVARIMFLREHRRNLLRDYCNDEVTKKEKNKLRLEIARVQKALKELDPDGMFPP
Ga0209196_10242073F015079N/AMVQAQIESIQGLGDWKSSYDGSTMYKFEVAFNDGTVGEANAKSQQPPYKVGEMAYYVKTGKSPKGGDKLKISKNPPPPGGFKQFQPAKQDPDKDKKMIRGMCFKVAGMAWANQYKHKSFELPHEVMVKDVISLAKKYEKAYNEWMEE
Ga0209196_10242077F091789N/AMISVHPYRCKTWSEAKREWGWLMRSKGLQQINRNAPTGYGEAPDLLKGKVEGVGFVIYPRDYDPREVTHIITTQSPIYGNRYCGTLNPF
Ga0209196_10242078F024541N/AMEFFDMIISQYGSVHRCAEKLGTNREQLLRQIRTGNDQVLNAIADNCRLSRQEVRWEFRYHKENT
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Bioinformatics & Integrated Biology Lab
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