Scaffold Ga0208849_1000022

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208849_1000022

Scaffold Ga0208849_1000022

Overview

Basic Information
Taxon OID	3300025664 Open in IMG/M
Scaffold ID	Ga0208849_1000022 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	165622
Total Scaffold Genes	134 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	103 (76.87%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska
Coordinates	Lat. (^o)	71.2999	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012383	Metagenome	281	Y
F023655	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208849_100002220	F012383	GGAG	MPGDMRDLRLPFHLCQLAEEKYGNRFGTLEQFLTHVLEQLVRDDATKMDQEEQRIIEERLKDLGYI
Ga0208849_100002287	F023655	N/A	MILGLVFALVVAALQQGDFADSPAAIQQRARSEYERHKQAAIRINDLAGHVQSEADAYSFVSEIACLFAKDLPAPWGSSTIRQRVAHAEYKAVRNPAQLISEQRIADVWNQYVREIGAPDEAIVSVAEIHNMRDGSFTVSQLMWARGNQTIWTMPNVYALGSDLRVADGCRALEALRVIHDLDGLFQNLRGARDRLRRGIVASEELKARIGEPKVQAHSAARLEVQEDTNPIRPAERRYVQEHGPEAYSQLIARLFEELFPTE

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