Scaffold Ga0208898_1002007

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208898_1002007

Scaffold Ga0208898_1002007

Overview

Basic Information
Taxon OID	3300025671 Open in IMG/M
Scaffold ID	Ga0208898_1002007 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12864
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (95.65%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → Puniceispirillum phage HMO-2011	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F006094	Metagenome / Metatranscriptome	382	Y
F035125	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_100200720	F006094	AGGAG	MLLHEFYSDEDCSRGDMSYRKSCVFKEPDGSYTIVLIQDGAIVDELNLLGHSEQYAEDTAEDWVMGVRR
Ga0208898_100200721	F002430	AGGAG	MMTLKLPKKQVNAILVALDAEIENQLGGRPVDWESFPEVAAMLMAYYTTRCNFEEENGNAVA
Ga0208898_100200723	F035125	N/A	RFVVEQDFEIEVRDSKLGMGSVFAIGDVMVSSGFDQWNVLTHESIFDNPVGELRPVHDSHWSDANLYNLGLHSEYIQPWLFEGEKDTDPYEETEEKEIYNA

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