Basic Information | |
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Taxon OID | 3300025671 Open in IMG/M |
Scaffold ID | Ga0208898_1005539 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7055 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (13.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F047385 | Metagenome / Metatranscriptome | 150 | Y |
F054687 | Metagenome / Metatranscriptome | 139 | Y |
F085539 | Metagenome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208898_100553911 | F054687 | N/A | MKETTANNINMTTNPEHLETLDDISIQTLIDHYLKLQEQLPTSLRVRDRLLELQQELLSRQPSTIEGIIRQTTDNPIQ |
Ga0208898_10055396 | F085539 | N/A | MRITQKDLDGAIDRINKLIPQKTFGLFKTPQVWYVATDRGERRVMSGKTKQALYDQLWAFIEGLEILKTIESN |
Ga0208898_10055397 | F047385 | N/A | MKIQQPSDNTLYITIGNYVYYFDDSIEGENIVSRWHLDDDESDIREDIQIGGELTKSVIN |
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