NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208898_1007852

Scaffold Ga0208898_1007852


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1007852 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5629
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029278Metagenome / Metatranscriptome189N
F043411Metagenome / Metatranscriptome156N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208898_100785210F043411N/AMIDEKTKRFINEIMKRRLTYNGKRVYIKSLGTKRALVSYYKENDYKMFKVDVKDLADFK
Ga0208898_100785215F029278N/AMKITIPTKWEDVTIGKYINLRPVLNSELTPINRVINILAVLTGQKKEVIKNISLDQYQSIKEKMSFLETELPRELKNNKFKIGDKWYKFELKAQNLIFAEYINIMEILQSAKDDQEAIFNNLHRILTTICRPIKKRFFMWHNIKMDAELIRETQQNFFDNMPMTIAYPIGVFFY
Ga0208898_10078526F056150AGGVNNKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGQDFIIRLDSENSIKKYVYKLCIFQIISERSRYKTKYYIPSHFSSLEDIETYTNTCFKDEVLKDLINSLEGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKKNWSINEFYT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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