Scaffold Ga0208898_1023770

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208898_1023770

Scaffold Ga0208898_1023770

Overview

Basic Information
Taxon OID	3300025671 Open in IMG/M
Scaffold ID	Ga0208898_1023770 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2637
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005264	Metagenome	406	Y
F005847	Metagenome	388	Y
F046338	Metagenome	151	N
F052568	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208898_10237703	F005847	GGA	MKTEPRGRIPQLYRDMKIGQRVVVHYGYKHAFHLLRSAWERSYRKRKIADGYDVPWLYLEPIGKSRTLVVRMCDESEVRAARAAFLARGKR
Ga0208898_10237705	F046338	GGA	MFAEQDINLQPGFLEITLRNDHEYALWSVNGQLLYEHISNQSNLQTFRHYLPNGLEGLRFDFAGSGTADGVIEHIEYHEYSTVPEPSLGDLIDLIGNGVGGLIGW
Ga0208898_10237706	F005264	AGGA	MKWWNIAAAVALMASGADAEILMSQNFTGLDQPFWATATDGKGDLIQWDLTDNCGGGAVWLNADGFHNNHLERQYEAHGYRYGIKRIPGAPVDDISEFVTVDWIQHHRNGAVEFGATTAGEWWRCSPSKTSTCSPVS
Ga0208898_10237709	F052568	N/A	LVREAAELLWPAERRRVTVLLRAPEFWDECENADLEASEELADICFDLWVGARG

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