NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1001812

Scaffold Ga0208162_1001812


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1001812 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10811
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F073486Metagenome120Y
F085642Metagenome111N
F088830Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0208162_100181218F001841AGGMRVAAWLFWRDPVAKPEPPQPKRPRKPILGYTVGDIPYELMAVVRIEWYRKGMAYEVEEYQIEECPDAQAQFHYIVGTALRQGADVAVLTQYEPEALGVQE
Ga0208162_100181220F088830N/AMDYTIKTDSLKLSRWYYAVLASKAVLQQKVAELETNGYVNPVFYMEKLEDLEDLEMFLKMTWDQWLESLAVDQTAVEESK
Ga0208162_10018126F073486N/AMAQTFQWTGSHVSGSTACAVVRYAGPTNTRGSRWLASIRRDRETVWRASATFEEGPITAALRAATKGGVEWSCISCHSIDADTYAIGF
Ga0208162_10018129F085642AGGVASTFSTSEPALTRTKARKQAAKDSRKEERDLIRDQKRQLRDLRYIAEKQTIPADLAADFWQQLIQLQHEHGKEGTTEFWWALVPKWEQVQLSRGGGLCSDDLKPANAPRLTETHKRVAAALERASHNSRTVDAAQVLQAWAMEDGTV
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