NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209657_1000109

Scaffold Ga0209657_1000109


Overview

Basic Information
Taxon OID3300025676 Open in IMG/M
Scaffold IDGa0209657_1000109 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56880
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (82.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001711Metagenome / Metatranscriptome648Y
F020921Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0209657_10001091F020921AGGMALPVVPNTNVAMYTHLRVSTDCEQTSNLSLASLLNGGSFAFDNSFGGAGGPMKDCDLIGGSNNPLQSTAGEVNLYDDDIGTAPFHMSHTIGGQYS
Ga0209657_10001092F001711AGGAMAKVIAEKIVEAPPVGDAPKQVEIKHTRVMKDAAGKDVTVVDWTDSKPVDDAITQAEADLVNAEARVVELKADIVEYKKIKG
Ga0209657_100010971F001711AGGAGMAKVIAAKTNVVAEAEKQVEIKHTRVMKDAAGKDVTVVDSTEVKGVDEAISQAEAQLVSAEARVVELKADIVAYKAIKG
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