NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209657_1017672

Scaffold Ga0209657_1017672


Overview

Basic Information
Taxon OID3300025676 Open in IMG/M
Scaffold IDGa0209657_1017672 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3055
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003169Metagenome / Metatranscriptome504Y
F018643Metagenome234Y
F037809Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0209657_10176725F003169AGGMIKYPLYKKNNSRKNTLLYPGLTTVSFDRIITYMQYYYVMCQKGSLLHRCYVQLDPESADILHDSLEQRYDLVQVCAVPRSSVEPDILIPPAP
Ga0209657_10176726F018643AGGAGMQSIILKPINAIQYTPSNPTLKSLFTQVQHLVSHQQFDLVVDLLTQAKHNEAYAKCKVNWDQVIASHLPYIHSPHM
Ga0209657_10176728F037809AGGAMKKLLLISALALLVGCSSAEANDVADDGKCLDDIKHYNHLVKTTGADQAAKDAAIVERDKGSEAWAQGDKEACETAYQAAWALID
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