Basic Information | |
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Taxon OID | 3300025676 Open in IMG/M |
Scaffold ID | Ga0209657_1017672 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3055 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Saanich Inlet, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003169 | Metagenome / Metatranscriptome | 504 | Y |
F018643 | Metagenome | 234 | Y |
F037809 | Metagenome | 167 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209657_10176725 | F003169 | AGG | MIKYPLYKKNNSRKNTLLYPGLTTVSFDRIITYMQYYYVMCQKGSLLHRCYVQLDPESADILHDSLEQRYDLVQVCAVPRSSVEPDILIPPAP |
Ga0209657_10176726 | F018643 | AGGAG | MQSIILKPINAIQYTPSNPTLKSLFTQVQHLVSHQQFDLVVDLLTQAKHNEAYAKCKVNWDQVIASHLPYIHSPHM |
Ga0209657_10176728 | F037809 | AGGA | MKKLLLISALALLVGCSSAEANDVADDGKCLDDIKHYNHLVKTTGADQAAKDAAIVERDKGSEAWAQGDKEACETAYQAAWALID |
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