Scaffold Ga0209719

Basic Information
Taxon OID	3300025677 Open in IMG/M
Scaffold ID	Ga0209719_1000814 Open in IMG/M
Source Dataset Name	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209719_1000814 Open in IMG/M

Source Dataset Name

Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42897
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (65.31%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

42897

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (65.31%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	Japan
Coordinates	Lat. (^o)	43.77	Long. (^o)	142.37	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Japan

Coordinates

Lat. (^o)

43.77

Long. (^o)

142.37

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035532	Metagenome / Metatranscriptome	172	N
F037746	Metagenome / Metatranscriptome	167	N
F053881	Metagenome / Metatranscriptome	140	N
F070633	Metagenome / Metatranscriptome	123	N
F074119	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209719_100081410	F053881	N/A	MTGLLKISKESLGEKERKLYSKLYRHIIESFEIDEIAADQISLALVCQKCILLPRLLSGEDVDINQVSESIRKWLSEYRLTPKSREKEKEVTINLSAIIEEIHRERENPN
Ga0209719_100081437	F035532	GAGG	MSFDPISFLANVERIFSAATGLSDVKTWSRPTKLSTSFETPEVTIEIIAGNIDSVSLSHPNKQIEFYVRFVIFEEQSSSASKIGGIYSGIIEAVRSNPDLKTKTGSATCDYFGTFYGRNISFDIAATERNGVSVNAMKIDVPCLVRDT
Ga0209719_10008146	F074119	GAGG	MSEIQVFEVLAKILPYLVTLGIGAFAGWELVKTKIHELAEFFNVVDEALYDDAVTEKEFRAIWEKGRALFQWSFAAKKGEA
Ga0209719_10008148	F037746	GGAGG	MPVDIEWAKANDTVGQEFESNYIPGTTDKDIEDARALMEKLLKKYGSRDALEADERDWAKYRQAMYVIASRSKDTMDAANKAREELIKRKNLLSQFFDDNREILFKLPEWARINLRKYTDYGLLIDQEYLWQALGELGEDGLTEHLLNVANYIYLDTGFLGGRREDYDALQKGPVRSIYHRPTCKSQKTVHPDCGSGCSKV
Ga0209719_10008149	F070633	N/A	LGGRDTGLRDRAKNRLVLDVSHSQGDEGFVYSVRQHLPLGPKKCTGGFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKIQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209719_1000814

Overview

Ecosystem & Geography

Associated Families

Sequences