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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025677 Open in IMG/M |
| Scaffold ID | Ga0209719_1010814 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5304 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Japan | |||||||
| Coordinates | Lat. (o) | 43.77 | Long. (o) | 142.37 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F072475 | Metagenome / Metatranscriptome | 121 | N |
| F084407 | Metagenome / Metatranscriptome | 112 | N |
| F092293 | Metagenome / Metatranscriptome | 107 | N |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209719_10108142 | F092293 | GAGG | MTRPPTLTDRQIQIIRENLDLFPADILKLPEFTDADVTRHTIRNYQRRLKNAAVIDEEEVLLTRLKQYMNRYGLESRFHGPRGVTGFITHLEKQIDLRAVERDNSENSAV |
| Ga0209719_10108145 | F094051 | GGAGG | MGNTGILGKVQIEGNWTQKRLILPVIQAALERTQLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSAKPTLAVGKMAAAMGVHQPTALVMGTLAGAYYVDAVGDKVAIANLAEWRGATSIHPTLNIPVFISTDIDKLDDTSGNRFVFGVCNATPGVVTVISKIKARQYDDPNLGAQVYQYDIWRSPFSNIQQTSGKNLGVMRGYMTES |
| Ga0209719_10108147 | F072475 | GAGG | MSESFASRFMSPDEKRAMIARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGNKAAYREAKKNPDAVFQYDDQLLALLNRVMKESIAEHHSDNDAARKQQLMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSPEEEQNIRRWNGCSP |
| Ga0209719_10108149 | F084407 | AGGAGG | MPTSGNVLALLPVLTPYTPTSAQFDLLYPYALDEFKGDDPGCSEAGAERALAYLVAHYLASKDGDVGLQSEKIDDYGYTLSATAARSSRWYAEYQRQIDRCREALAIGPAALAGVQHADVSGLSDLHLDQNPVVRVRRDGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |