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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025687 Open in IMG/M |
| Scaffold ID | Ga0208019_1013453 Open in IMG/M |
| Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3395 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Chesapeake Bay | |||||||
| Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003357 | Metagenome / Metatranscriptome | 492 | N |
| F007531 | Metagenome / Metatranscriptome | 349 | Y |
| F015099 | Metagenome / Metatranscriptome | 257 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208019_10134533 | F015099 | AGGAG | MSHSSKNWQVIYRHKNSLAGCFVWAPDEAQAEKKFKARKEFEYDPEFDRDPEEGNIRSIYEYVAPQSNVAKKTKMDELEAFVKFPQFYPFLKKYDSGDEKALAKQIPLTPDNIAIIDGIAKVIPIIRRYRGPRTRGGFMRECHKQDAERVSIYAR |
| Ga0208019_10134535 | F003357 | AGGAGG | MTRNSWILKQIYTDAKNNLGWVFKVVLMAGGFIAGIKLLMFFSVPKEIVFPVLWTAFILVAIYHWYSMKYDWKKDESKYDRASKRYMKKLKGGK |
| Ga0208019_10134536 | F007531 | AGGAG | MLKKIEKQILEFAKDTGLTERREIVHGTLYVKLHEEKECDTFHRAIRTFYKNQINNEGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSEEKYSGKEMMDPTDIDKGVWSEFAEEELMNNVPEDVDTMLDLMNDAKEGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |