NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208019_1013914

Scaffold Ga0208019_1013914


Overview

Basic Information
Taxon OID3300025687 Open in IMG/M
Scaffold IDGa0208019_1013914 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3325
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001873Metagenome623Y
F002942Metagenome518Y
F018356Metagenome235N
F093801Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208019_10139141F001873GGAGMKWWNIAAALAVLAGGADAEILMMSHDFTEFQHPFWATEADGKGDLIQWDLTDKCGGGSVWLNADGFFNNHLDRQYTAHGYRYGIKRIPGAPVDDISDFVTNDWIQHHRDGAVEFGGNDSRGMVEFYAERDVSLQPGFLTVTLSNDREYAVWKFNGRVVYTHDNRENNLQKFRIDIPDGLDQMRFEFSGSGTADGVIEHVEYHEYSTVPEPSLGDLIDLIGNGVGGLIGW
Ga0208019_10139143F002942AGGMNNEQFTAFVILLAAVSVPSVSLLFAGAWELWRYAKRAEP
Ga0208019_10139145F093801AGGGGGMFRYPTENTTAPVCPYCQASHSEPEDLDESEAHCVACDDCGKLYAAVCDYQGWVTRCGGSHKWHALNGVRVCSRCGADG
Ga0208019_10139148F018356N/ANTRRIQFASFSPAGSAANGLAVSWYWPPGFRSGGTTEWRLGWDEPGAATVYTSWLAWDATEAQIESAIIGALGENTEGIYSNVNLWALGKTQPDNTCAAYEAGLYIQFLTSPDPDNNPFGFIDSRRLTAVRDRHRIEFKNYEEQAPHSVAAWSTADGSVTWSRYYGFAGTQPITWLRRAWCDGGSWVWLAGPVVDPD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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