Basic Information | |
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Taxon OID | 3300025687 Open in IMG/M |
Scaffold ID | Ga0208019_1013914 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3325 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 38.9819 | Long. (o) | -76.3716 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001873 | Metagenome | 623 | Y |
F002942 | Metagenome | 518 | Y |
F018356 | Metagenome | 235 | N |
F093801 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208019_10139141 | F001873 | GGAG | MKWWNIAAALAVLAGGADAEILMMSHDFTEFQHPFWATEADGKGDLIQWDLTDKCGGGSVWLNADGFFNNHLDRQYTAHGYRYGIKRIPGAPVDDISDFVTNDWIQHHRDGAVEFGGNDSRGMVEFYAERDVSLQPGFLTVTLSNDREYAVWKFNGRVVYTHDNRENNLQKFRIDIPDGLDQMRFEFSGSGTADGVIEHVEYHEYSTVPEPSLGDLIDLIGNGVGGLIGW |
Ga0208019_10139143 | F002942 | AGG | MNNEQFTAFVILLAAVSVPSVSLLFAGAWELWRYAKRAEP |
Ga0208019_10139145 | F093801 | AGGGGG | MFRYPTENTTAPVCPYCQASHSEPEDLDESEAHCVACDDCGKLYAAVCDYQGWVTRCGGSHKWHALNGVRVCSRCGADG |
Ga0208019_10139148 | F018356 | N/A | NTRRIQFASFSPAGSAANGLAVSWYWPPGFRSGGTTEWRLGWDEPGAATVYTSWLAWDATEAQIESAIIGALGENTEGIYSNVNLWALGKTQPDNTCAAYEAGLYIQFLTSPDPDNNPFGFIDSRRLTAVRDRHRIEFKNYEEQAPHSVAAWSTADGSVTWSRYYGFAGTQPITWLRRAWCDGGSWVWLAGPVVDPD |
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