NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209505_1005872

Scaffold Ga0209505_1005872


Overview

Basic Information
Taxon OID3300025690 Open in IMG/M
Scaffold IDGa0209505_1005872 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6171
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034541Metagenome / Metatranscriptome174N
F064636Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209505_10058723F064636AGAAGGMKALLIVAALNMQLVYDDMAVCKQALSELKDNNIEAICIPKGEDVKSHDMMAQFMDMVAQLQSIEQGE
Ga0209505_10058728F034541GGAMKTVESMTWDDLQSALTEYQVNGNGGGMGVRDVQIKHSIEDEVAWRLEKGYTDLSPREIEIELLEQGKIERRYL

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