NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209505_1010999

Scaffold Ga0209505_1010999


Overview

Basic Information
Taxon OID3300025690 Open in IMG/M
Scaffold IDGa0209505_1010999 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3922
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026537Metagenome / Metatranscriptome197N
F068220Metagenome / Metatranscriptome125Y
F092864Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209505_10109991F092864GGAMTNEQAIQIVLENKDPSNAERLAAMYACDDILEIDIDVWLSKDVSEYLPQFPDIAESLVEDLLKEDGISVERVANSLTEVSRSMYYYVKFYEILSSYDMALSER
Ga0209505_101099910F026537N/AMKKEIINRLEYVEETYAGELETWHDPVADTYYHVPIEITRRWDESEALINDKANTMTHERKEQHIKQLAFSIQHGAAGYVTDNFVIEDLPVPQRTGTMTQQDTYAKHKARQIFDAFLEQNPNIND
Ga0209505_101099912F068220N/AMKLYASIHGVCGLAEGYSETTVQFFKTLEQAKEHKAKVLALVMKDGYEEIITLSDGTQDIVVVNDDESEHEILKIIEVNPLWDTDHFNPANSRTCEWLMWNQMESEAMYDGEYLPTDMGCIKEATDILYGANESILMEPWADFVGGIFYRGTSAMLDADDVCIHFFRIPKSDTL
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